species:   Bodot
pid:       PID1077
parent:    Bd-milR30
paralog:   
locus:     SACU01000006.1:609050-609351
matures:   ['UGUAUUCCCGCUCUUGCCAUUC', 'AUGACGAGGAUGAGGAUACAAUC']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000006.1:609050-609351

1 out of bounds
2 alignments
2 proper strand
1 stranded perfect matches

        ************************                 *************************                                                                                                                                                                                                                                    
UUUGGAAUGAUGUAUUCCCGCUCUUGCCAUUCAGUGACUGGACGUUGCAAGAUGACGAGGAUGAGGAUACAAUCCAAGCUUCGGAGAUUCAGCUCCUUACGAAGCGUGUACUUGAGUCGCAAGAUUUCGAGCAGGAUCUCAAAGAUGCCCUUUUUGGUGUUGACGAAGCGGACGAAACGUUCGAUAUGGUAGUCGGAUCUACUGUAUCAGAUGUGCGCAUACCAGUUCAUCAGUGGAUAAUUGCUGCACGCAGCAAAGUCCUCCGGCAAGGUCUCGCGGAGUUCCGAGAAUUAGGUUCCUUC
...((((((((((((((.((.(((((.((((..(((((.....)))))..)))).))))).)).)))))).)))...(((((((((((((.(((((((.(((..((......))..))).))).....)))).)))))))...((((((......))))))..))))))(((((...)))))((((((((((......)))))))))).((((.((........)).))))...((((..((((((....)))))).)))).((.....))(((((.(.....)))))).....)))))...
----------UGUAUUCCCGCUCUUGCCAUUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=0 c
---------------------------------------------------AUGACGAGGAUGAGGAUACAAUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=23 a=0 c*
-------------------------------------CUGGACGUUGCAAGAUGACGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 ma
---------------------------------------------------AUGACGAGGAUGAGGAUACAAUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=23 a=0 ma*

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCGGAUCUACUGUAUCAGAc------------------------------------------------------------------------------------------ l=20 a=1 
-------------------------------------CUGGACGUUGCAAGAUGACGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 (ma)

mb-00010
ax-1010011
ku-01
ss-110101111100
fn-011
